I think there's a huge need for such an option.

GBIF doesn't allow deposition of datasets by individual researchers. The dataset must be the responsibility of a journal or society that agrees to be, as far as I can tell, the quality control mediator. This is how, for example, all those datasets from ZooKeys get into GBIF - some of which are indeed mixtures of data from different institutions, eg:

ZooKeys: Type specimen data for Nicrophorus efferens Sikes & Mousseau. doi:10.15468/belp5q
Accessed via http://www.gbif.org/dataset/8fd60078-620a-40a6-b565-0b093778e0fe on 2016-09-13

Perhaps this is something SysEB in the Ent Soc of America could take on? I imagine at least one, maybe more, people would need to be involved, and don't know how much the work load would be but this could be a first step to getting individual researcher's datasets, being a mixture of different institutional data, online.

Or perhaps SysEB would only publish datasets that are associated with ESA journals?

And of course, someone needs to pay close attention to the specimen identifiers and depository acronyms so these data can be relatively painlessly found and claimed by their owning institution (whenever that institution gets around to wanting them kept track of.)


On Mon, Sep 12, 2016 at 9:35 PM, Nico Franz <[log in to unmask]> wrote:
Thank you, all.

   Sorry I dropped the ball there for a few days. I received several interesting off-line answers in addition. 

   I think I should also try to clarify. First off, for the (some) botanists - in entomology there is much less of a tradition of "creating duplicates" (of purportedly the same individual..thinking about branches of an oak tree here). Insect specimens overwhelmingly remain and travel "entire" (even following dissection). I hope that distinction is fair enough to most.

   Here is the conflict, as simple as I can state it. There is an institution that the specimens ultimately belong to, and that loans them out to a researcher. Then there is a researcher, not affiliated with the institution, who right now has resources and arguably needs to "publish" the specimens via iDigBio, GBIF, etc. (as well as other outlets such as a research journal).

   Let's assume that the owning institution just really does not have the resources right now. Not even to put a locally unique specimen identifier on it (or, it does that, but there is no digital counterpart). And the researcher does. Beyond writing a kind, explanatory e-mail, and figuring things out (idiosyncratically), is there some more widespread accepted practice for resolving this conflict? Answering "I use this or that portal that I happen to have access to and which does it for me", is not really a generally applicable answer, right?

   If not, should we as a community (in our most hopeful moments, anyway) consider creating one or more that are very open for contributions? Something like an open portal for digitizing and iDigBio-/GBIF-publishing research-relevant specimens of/for owner institutions that "just can't right now, sorry". 



On Mon, Sep 5, 2016 at 7:11 PM, Gil Nelson <[log in to unmask]> wrote:
Hi, Nico

I am not exactly sure what you are looking for, but here is a link to a set of community generated workflows for several disciplines.


Are you looking for entomology workflows? If so, what groups in particular? Katja Seltmann would also be a good resource for this.



On 9/5/2016 1:56 PM, Nico Franz wrote:
Hi all:

   Is there a good reference (publication) I'm not aware of that guides one towards best practices for digitizing and iDigBio-/GBIF-publishing specimens from another source collection which has not yet done so, for the purpose of a revisionary project?

Best, Nico

Gil Nelson, PhD
Assistant Professor/Research
iDigBio Steering Committee
Integrated Digitized Biocollections
Institute for Digital Information and Scientific Communication
College of Communication and Information

Courtesy Professor
Department of Biological Sciences
Robert K. Godfrey Herbarium
Florida State University
[log in to unmask]


Derek S. Sikes, Curator of Insects
Associate Professor of Entomology
University of Alaska Museum
907 Yukon Drive
Fairbanks, AK   99775-6960

[log in to unmask]

phone: 907-474-6278
FAX: 907-474-5469

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